CCBR402 Microarray project Report

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## Raw data QC Plots ......
##  group :  Balb12wk

## group :  Balb3wkInv

## group :  Balb5wk

## group :  Balb6dPregnant

## group :  Balb7dLactation

## group :  FVB12wk

## group :  FVB12wkInv

## group :  FVB3wkInv

## group :  FVB5wk

## group :  FVB6dPregnant

## group :  FVB7dLactation

##   RLE and NUSE Plots ...
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##   Probset presence Plot ...
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## Post-Normalization plots ......
##  Background correcting
## Normalizing
## Calculating Expression
## group :  Balb12wk  after normalization

## group :  Balb3wkInv  after normalization

## group :  Balb5wk  after normalization

## group :  Balb6dPregnant  after normalization

## group :  Balb7dLactation  after normalization

## group :  FVB12wk  after normalization

## group :  FVB12wkInv  after normalization

## group :  FVB3wkInv  after normalization

## group :  FVB5wk  after normalization

## group :  FVB6dPregnant  after normalization

## group :  FVB7dLactation  after normalization

##   PCA and clustering plots ...
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## Limma, DEG and MAplot ......
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## DEG summary  ...
##                                adjPvalue<0.05 +abs(fc)>=1 +abs(fc)>=2
## Balb5wk-FVB5wk                           1030         244          46
## Balb12wk-FVB12wk                          473         167          40
## Balb6dPregnant-FVB6dPregnant              714         218          49
## Balb7dLactation-FVB7dLactation           2042         329          35
## Balb3wkInv-FVB3wkInv                      698         210          46
## FVB12wk-FVB5wk                            851         235          48
## FVB6dPregnant-FVB12wk                     731         191          15
## FVB7dLactation-FVB6dPregnant            18724        4023         576
## FVB3wkInv-FVB7dLactation                19392        4327         660
## Balb12wk-Balb5wk                           96          40           4
## Balb6dPregnant-Balb12wk                  1640         371          42
## Balb7dLactation-Balb6dPregnant          23243        5429         906
## Balb3wkInv-Balb7dLactation              21962        5004         764
## FVB12wkInv-FVB12wk                       1135         247          94
## FVB12wkInv-FVB3wkInv                      126          24           2

## [1] 0

End report.